Publications

2018

38. Matamoro-Vidal A, Huang Y, Salazar-Ciudad I, Shimmi O, Houle D. Quantitative Morphological Variation in the Developing Drosophila Wing. G3 (Bethesda). 2018 Jul;8(7):2399-2409.

37. Marin-Riera M, Moustakas-Verho J, Savriama Y, Jernvall J, Salazar-Ciudad I. Differential tissue growth and cell adhesion alone drive early tooth morphogenesis: An ex vivo and in silico study.PLoS Comput Biol. 2018 Feb;14(2):e1005981

36. Salvador-Martínez I, Coronado-Zamora M, Castellano D, Barbadilla A, Salazar-Ciudad I. Mapping Selection within Drosophila melanogaster Embryo's Anatomy. Mol Biol Evol. 2018 Jan;35(1):66-79

2017

35. Renvoisé E, Kavanagh KD, Lazzari V, Häkkinen TJ, Rice R, Pantalacci S, Salazar-Ciudad I, Jernvall J. Mechanical constraint from growing jaw facilitates mammalian dental diversity. PNAS. 2017 Aug 114(35):9403-9408.

34. Salvador-Martínez I, Salazar-Ciudad I. How complexity increases in development: An analysis of the spatial-temporal dynamics of Gene expression in Ciona intestinalis. Mech Dev. 2017 Apr;144(Pt B):113-124.

33. Brun-Usan M, Marín-Riera M, Grande C, Truchado-Garcia M, Salazar-Ciudad I. A set of simple cell processes is sufficient to model spiral cleavage. Development. 2017 Jan 1;144(1):54-62.

2016

32. Marin-Riera M, Brun-Usan M, Zimm R, Välikangas T, Salazar-Ciudad I. Computational modeling of development by epithelia, mesenchyme and their interactions: a unified model. Bioinformatics. 2016 Jan 15;32(2):219-25.

2015

31. Ray RP, Matamoro-Vidal A, Ribeiro PS, Tapon N, Houle D, Salazar-Ciudad I, Thompson BJ. Patterned Anchorage to the Apical Extracellular Matrix Defines Tissue Shape in the Developing Appendages of Drosophila. Dev Cell. 2015 Aug 10;34(3):310-22.

30. Salvador-Martínez I, Salazar-Ciudad I. How complexity increases in development: An analysis of the spatial-temporal dynamics of 1218 genes in Drosophila melanogaster. Dev Biol. 2015 Sep 15;405(2):328-39.

29. Matamoro-Vidal A, Salazar-Ciudad I, Houle D. Making quantitative morphological variation from basic developmental processes: Where are we? The case of the Drosophila wing. Dev Dyn. 2015 Jan 23.

2014

28. Brun-Usan M, Marin-Riera M, Salazar-Ciudad I. On the effect of phenotypic dimensionality on adaptation and optimality. J Evol Biol. 2014 Dec;27(12):2614-28.

27. Harjunmaa E, Seidel K, Häkkinen T, Renvoisé E, Corfe IJ, Kallonen A, Zhang ZQ, Evans AR, Mikkola ML, Salazar-Ciudad I, Klein OD, Jernvall J. Replaying evolutionary transitions from the dental fossil record. Nature. 2014 Aug 7;512(7512):44-8.

26. Moustakas-Verho JE, Zimm R, Cebra-Thomas J, Lempiäinen NK, Kallonen A, Mitchell KL, Hämäläinen K, Salazar-Ciudad I, Jernvall J, Gilbert SF. The origin and loss of periodic patterning in the turtle shell. Development. 2014 Aug;141(15):3033-9.

2013

25. Salazar-Ciudad I, Marín-Riera M. Adaptive dynamics under development-based genotype-phenotype maps. Nature. 2013 May 16;497(7449):361-4.

24. Salazar-Ciudad I, Evolution in Biological and Non-biological Systems: The Origins of Life. Biological Theory. 2013. 7(1):26-37.

23. Salazar-Ciudad I, Jernvall, J The Causality Horizon and the Developmental Bases of Morphological Evolution. Biological Theory. 2013 8(3):286-292.

2012

22. Salazar-Ciudad I. Tooth patterning and evolution. Curr Opin Genet Dev. 2012 Dec;22(6):585-92.

2010

21. Salazar-Ciudad I. A two level mutation-selection model of cultural evolution and diversity. J Theor Biol. 2010 Nov 21;267(2):171-85.

20. Salazar-Ciudad I. And Jernvall, J. A computational model of teeth and the developmental origins of morphological variation. Nature. 2010 Mar 25;464(7288):583-6.

19. Salazar-Ciudad I. Morphological evolution and embryonic developmental diversity in metazoa. Development. 2010 Feb;137(4):531-9. doi: 10.1242/dev.045229.

2009

18. Salazar-Ciudad I. Looking at the origin of phenotypic variation from pattern formation gene networks. J Biosci. 2009 Oct;34(4):573-87. Review.

2008

17. Salazar-Ciudad I. Evolution in biological and nonbiological systems under different mechanisms of generation and inheritance. Theory Biosci. 2008 Nov;127(4):343-58. doi: 10.1007/s12064-008-0052-x. Epub 2008 Oct 23.

16. Salazar-Ciudad I. Tooth morphogenesis in vivo, in vitro, and in silico. Curr Top Dev Biol. 2008;81:341-71. Review.

2007

15. Salazar-Ciudad I. On the origins of morphological variation, canalization, robustness, and evolvability. Integr Comp Biol. 2007 Sep;47(3):390-400. doi: 10.1093/icb/icm075. Epub 2007 Jul 26.

14. Jernvall J, Salazar-Ciudad I. The economy of tinkering mammalian teeth. Novartis Found Symp. 2007;284:207-16; discussion 216-24. Review.

13. Veitia RA, Salazar-Ciudad I. Commonalities in fly embryogenesis and mammalian pituitary patterning. Trends Endocrinol Metab. 2007 Sep;18(7):261-5. Epub 2007 Aug 10. Review.

2006

12. Salazar-Ciudad, I. Making evolutionary predictions about the structure of development and morphology: beyond the neo-Darwinian and constraints paradigm. In: (eds. Minelli A. and Fusco G.). Evolutionary Developmental Biology. Cambridge University Press.

11. Järvinen E, Salazar-Ciudad I, Birchmeier W, Taketo MM, Jernvall J, Thesleff I. Continuous tooth generation in mouse is induced by activated epithelial Wnt/beta-catenin signaling. Proc Natl Acad Sci U S A. 2006 Dec 5;103(49):18627-32. Epub 2006 Nov 22.

10. Salazar-Ciudad I. On the origins of morphological disparity and its diverse developmental bases. Bioessays. 2006 Nov;28(11):1112-22.

9. Salazar-Ciudad I. Developmental constraints vs. variational properties: How pattern formation can help to understand evolution and development. J Exp Zool B Mol Dev Evol. 2006 Mar 15;306(2):107-25. Review.

2005

8. Salazar-Ciudad I, Jernvall J. Graduality and innovation in the evolution of complex phenotypes: insights from development. J Exp Zool B Mol Dev Evol. 2005 Nov 15;304(6):619-31.

2004

7. Salazar-Ciudad I, Jernvall J. How different types of pattern formation mechanisms affect the evolution of form and development. Evol Dev. 2004 Jan-Feb;6(1):6-16.

2003

6. Salazar-Ciudad I, Jernvall J, Newman SA. Mechanisms of pattern formation in development and evolution. Development. 2003 May;130(10):2027-37. Review.

2002

5. Salazar-Ciudad I, Jernvall J. A gene network model accounting for development and evolution of mammalian teeth. Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8116-20. Epub 2002 Jun 4.

2001

4. Salazar-Ciudad I, Solé RV, Newman SA. Phenotypic and dynamical transitions in model genetic networks. II. Application to the evolution of segmentation mechanisms. Evol Dev. 2001 Mar-Apr;3(2):95-103. Erratum in: Evol Dev 2001 Sep-Oct;3(5):371.

3. Salazar-Ciudad I, Newman SA, Solé RV. Phenotypic and dynamical transitions in model genetic networks. I. Emergence of patterns and genotype-phenotype relationships. Evol Dev. 2001 Mar-Apr;3(2):84-94.

2000

2. Solé RV, Salazar-Ciudad I I, Newman SA. Gene network dynamics and the evolution of development. Trends Ecol Evol. 2000 Dec 1;15(12):479-480.

1. Salazar-Ciudad I, Garcia-Fernández J, Solé RV.Gene networks capable of pattern formation: from induction to reaction-diffusion.J Theor Biol. 2000 Aug 21;205(4):587-603.